Characterization of Codon Usage Bias in UL21gene from Duck Enteritis Virus
نویسندگان
چکیده
منابع مشابه
Characterization of codon usage bias in the dUTPase gene of duck enteritis virus
A comparative analysis of the codon usage bias in the newly discovered dUTPase gene (Assigned Accession No.: DQ486149) of the duck enteritis virus (DEV) and the dUTPase gene of 32 reference herpesviruses was performed. The results indicated that the DEV dUTPase gene encodes a protein of 477 amino acids, which includes five conserved motifs with a 3–1–2–4–5 arrangement. The codon adaptation inde...
متن کاملCharacterization of synonymous codon usage bias in the duck plague virus UL35 gene.
OBJECTIVE The aim was to identify the codon usage bias between the newly identified duck plague virus (DPV) UL35 gene (GenBank accession No. EF643558) and the UL35-like genes of 27 other reference herpesviruses. METHODS A comparative analysis of the codon usage bias of the 28 herpesviruses was performed by using the CodonW 1.4 program and CUSP (create a codon usage table) program of EMBOSS (T...
متن کاملIdentification of Synonymous Codon Usage Bias in the Pseudorabies Virus UL31 Gene
Background: Little knowledge of synonymous codon usage pattern of pseudorabies virus (PRV) genome, especially the UL31 gene in the process for its evolution is available. Objectives: In the present study, the codon usage bias between PRV UL31 sequence and the UL31-like sequences was identified. Materials and Methods: We used a comprehensive analysi...
متن کاملDuck Virus Enteritis
Identification of the agent: The virus may be isolated from the liver, spleen and kidneys of birds dying from this infection. Virus may be recovered by infecting susceptible ducklings, in which the disease can be reproduced; by inoculating embryonated Muscovy duck eggs on the chorioallantoic membrane; or by inoculating cell cultures of duck embryo or Muscovy duck embryo origin. The identity of ...
متن کاملMore Codon Usage Bias
χ measure. In statistics, the χ statstic computes how different the distribution of values is from a uniform distribution. Let d = c1 . . . cN be a DNA string in nucleotide alphabet, and let L be the total number of codons in d that are not Methinine or Tryptophan (the number does include the stop codons though). Let a be a k-degenerate amino acid, and let La be the total number of codons codin...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: AASRI Procedia
سال: 2012
ISSN: 2212-6716
DOI: 10.1016/j.aasri.2012.06.020